Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
count-lines5-wf.cwl
|
https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines5-wf.cwl Branch/Commit ID: master |
|
|
|
ACTseq.cwl
|
https://github.com/CompEpigen/ChIPseq_workflows.git
Path: CWL/workflows/ACTseq.cwl Branch/Commit ID: master |
|
|
|
SAMSA2 pipeline
SAMSA2 complete workflow for meta-omics read annotation Steps: - Diamond read blastx - Refseq - SEED - SAMSA2 processing |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_samsa2.cwl Branch/Commit ID: master |
|
|
|
Uses Bruker TopSpin to convert a zipped NMR data directory to JCAMP-DX
|
https://github.com/NFDI4Chem/formaTAPIRest.git
Path: cwl/zipped2bruker2jcamp.cwl Branch/Commit ID: main |
|
|
|
Detect DoCM variants
|
https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: master |
|
|
|
Downsample and HaplotypeCaller
|
https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/downsample_and_recall.cwl Branch/Commit ID: downsample_and_recall |
|
|
|
chksum_for_a_corrupted_fastq_file.cwl
|
https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_for_a_corrupted_fastq_file.cwl Branch/Commit ID: develop |
|
|
|
find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
https://github.com/mskcc/access-pipeline.git
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
|
|
|
fastqc-0-11-4-1.cwl
|
https://github.com/mr-c/4dn-dcic-pipelines-cwl.git
Path: cwl_awsem_v1/fastqc-0-11-4-1.cwl Branch/Commit ID: dev2 |
|
|
|
mug_refinement.cwl
|
https://github.com/bioexcel/virtualscreening.git
Path: cwl/mug_refinement.cwl Branch/Commit ID: master |
