Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph collate_unique_SSU_headers.cwl

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 9c57dba
workflow graph ribosomal_cleanup

This workflow detect and remove ribosomal from a DNA fasta file

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/ribosomal-cleanup.cwl

Branch/Commit ID: master
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/FarahZKhan/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-single.cwl

Branch/Commit ID: master
workflow graph host_workflow.cwl

https://github.com/azzaea/tsts.git

Path: cwl/host_workflow.cwl

Branch/Commit ID: master
workflow graph wf_trim_and_map_pe.cwl

This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment

https://github.com/yeolab/eclip.git

Path: cwl/wf_trim_and_map_pe.cwl

Branch/Commit ID: master
workflow graph count-lines8-wf-noET.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines8-wf-noET.cwl

Branch/Commit ID: master
workflow graph composed_workflows.cwl

https://github.com/giannisdoukas/CWLJNIKernel.git

Path: tests/cwl/composed_workflows.cwl

Branch/Commit ID: master
workflow graph bed_to_coverage_track.cwl

https://github.com/CompEpigen/ATACseq_workflows.git

Path: CWL/workflow_modules/bed_to_coverage_track.cwl

Branch/Commit ID: master
workflow graph metrics-flow.cwl

Run metrics workflow

 https://github.com/sentieon/sentieon-cwl.git

Path: stage/metrics-flow.cwl

Branch/Commit ID: master
workflow graph bulk scRNA-seq pipeline using Salmon

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: bulk-pipeline.cwl

Branch/Commit ID: 72cf42a