Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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WGS and MT analysis for fastq files
rna / protein - qc, preprocess, filter, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/wgs-noscreen-fasta.workflow.cwl Branch/Commit ID: master |
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germline-gpu.cwl
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https://github.com/NCGM-genome/WGSpipeline.git
Path: Workflows/germline-gpu.cwl Branch/Commit ID: main |
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wf_get_peaks_pe.cwl
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https://github.com/YeoLab/eclip.git
Path: cwl/wf_get_peaks_pe.cwl Branch/Commit ID: master |
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Detect Variants workflow
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: low-vaf |
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exome alignment and germline variant detection
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https://github.com/genome/cancer-genomics-workflow.git
Path: detect_variants/germline_detect_variants.cwl Branch/Commit ID: toil_compatibility |
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Replace legacy AML Trio Assay
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/aml_trio_cle.cwl Branch/Commit ID: low-vaf |
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03-map-pe-blacklist-removal.cwl
ATAC-seq 03 mapping - reads: PE - blacklist removal |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/03-map-pe-blacklist-removal.cwl Branch/Commit ID: master |
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wf_clipseqcore_chimeric_se_1barcode.cwl
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https://github.com/YeoLab/eclip.git
Path: cwl/wf_clipseqcore_chimeric_se_1barcode.cwl Branch/Commit ID: master |
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qiime2 create feature visual summaries
FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-04-features.cwl |
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chksum_for_a_corrupted_xam_file.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_for_a_corrupted_xam_file.cwl Branch/Commit ID: develop |
