Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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facets
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/facets.cwl Branch/Commit ID: dev |
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gatk4W.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
https://github.com/ambarishK/bio-cwl-tools.git
Path: gatk4W.cwl Branch/Commit ID: release |
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fastq2bam.cwl
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https://github.com/nigyta/rice_reseq.git
Path: workflows/fastq2bam.cwl Branch/Commit ID: master |
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beagle-imputation-per-region.cwl
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https://github.com/ddbj/imputation-server-wf.git
Path: Workflows/beagle-imputation-per-region.cwl Branch/Commit ID: main |
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beast-2step-workflow.cwl
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https://github.com/GusEllerm/CWL_workflows.git
Path: workflows/BEAST_examples/beast-2step-workflow.cwl Branch/Commit ID: main |
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umi molecular alignment fastq workflow
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/pipelines/umi_molecular_alignment.cwl Branch/Commit ID: No_filters_detect_variants |
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cnv_manta
CNV Manta calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/abstract_operations/subworkflows/cnv_manta.cwl Branch/Commit ID: master |
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bgzip and index VCF
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: downsample_and_recall |
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Salmon quantification, FASTQ -> H5AD count matrix
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: steps/salmon-quantification.cwl Branch/Commit ID: d71be68 |
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EMG pipeline v3.0 (paired end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: master |
