Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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wgs alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_wgs.cwl Branch/Commit ID: master |
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strelka workflow
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https://github.com/hamid58b/cancer-genomics-workflow.git
Path: strelka/workflow.cwl Branch/Commit ID: master |
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CODEX analysis pipeline using Cytokit
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https://github.com/hubmapconsortium/codex-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 2d9ddc6 |
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Apply filters to VCF file
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: low-vaf |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 5e82174 |
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exomeseq-gatk4-02-variantdiscovery.cwl
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https://github.com/Duke-GCB/bespin-cwl.git
Path: subworkflows/exomeseq-gatk4-02-variantdiscovery.cwl Branch/Commit ID: master |
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SetParameterWorkflowMissing
This is a placeholder for a missing setting workflow. |
https://github.com/gammasim/workflows.git
Path: workflows/SetParameterWorkflowMissing.cwl Branch/Commit ID: main |
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rhapsody_targeted_1.9-beta.cwl#SplitAndSubsample.cwl
SplitAndSubsample splits, subsamples and formats read files to be deposited in QualityFilter. |
https://github.com/longbow0/cwl.git
Path: v1.9-beta/rhapsody_targeted_1.9-beta.cwl Branch/Commit ID: master Packed ID: SplitAndSubsample.cwl |
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sc_atac_seq_prep_process_analyze.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: sc_atac_seq_prep_process_analyze.cwl Branch/Commit ID: d0e845d |
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find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
