Explore Workflows

https://github.com/mr-c/h3agatk.git

Path: workflows/GATK/GATK-Sub-Workflow-h3abionet-snp.cwl

Branch/Commit ID: cwl_v1_0

https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git

Path: janis_pipelines/wgs_somatic/cwl/tools/vardictSomaticVariantCaller_v0_1_0.cwl

Branch/Commit ID: master

Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bwa_index.cwl

Branch/Commit ID: 1.1.3

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: tools/5S-from-tablehits.cwl

Branch/Commit ID: 43d2fb8

https://github.com/nci-gdc/htseq-cwl.git

Path: workflows/subworkflows/htseq_workflow.cwl

Branch/Commit ID: master

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl

Branch/Commit ID: 1.1.3

https://github.com/ddbj/human-reseq.git

Path: Workflows/bams2gvcf.woBQSR_male_chrXY_wXTR.cwl

Branch/Commit ID: master

STARR-seq pipeline - reads: PE

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/STARR-seq_pipeline/pipeline-pe-umis.cwl

Branch/Commit ID: master

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_dispatch/2working_files/workflow.cwl

Branch/Commit ID: master

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/svonworl/OxoG-Dockstore-Tools.git

Path: annotator_sub_wf.cwl

Branch/Commit ID: develop