Explore Workflows
View already parsed workflows here or click here to add your own
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find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
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cwlsite.cwl
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Path: site/cwlsite.cwl Branch/Commit ID: master |
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collect_pair_files.cwl
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Path: modules/pair/collect_pair_files.cwl Branch/Commit ID: master |
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cluster_blastp_wnode and gpx_qdump combined
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Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: master |
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Salmon quantification, FASTQ -> H5AD count matrix
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Path: steps/salmon-quantification.cwl Branch/Commit ID: 4bb798e |
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count-lines11-wf-noET.cwl
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Path: v1.0/v1.0/count-lines11-wf-noET.cwl Branch/Commit ID: master |
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broad-best-practice-data-pre-processing-workflow-4-1-0-0_decomposed.cwl
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Path: broad-best-practice-data-pre-processing-workflow-4-1-0-0_decomposed.cwl Branch/Commit ID: master |
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schemadef_types_with_import-wf.cwl
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Path: tests/schemadef_types_with_import-wf.cwl Branch/Commit ID: main |
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AccceptParameter
accept a simulation model parameter (or set of parameters) as validated and to be used in future MC productions. |
Path: workflows/AccceptParameter.cwl Branch/Commit ID: main |
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canine_annotation_module.cwl
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Path: subworkflows/canine_annotation_module.cwl Branch/Commit ID: master |
