Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph main-NA12878-platinum-chr20.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: NA12878-chr20/NA12878-platinum-chr20-workflow/main-NA12878-platinum-chr20.cwl

Branch/Commit ID: master
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: 8a00eb4
workflow graph workflow.cwl

https://gitlab.ebrains.eu/sofiakar/yre-standardised-workflows.git

Path: Workflows/PSD_workflow_smr_1/workflow.cwl

Branch/Commit ID: main
workflow graph LSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/LSU-from-tablehits.cwl

Branch/Commit ID: c211071
workflow graph count-lines18-wf.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines18-wf.cwl

Branch/Commit ID: master
workflow graph wf_amr_prot.cwl

https://github.com/ncbi/pipelines.git

Path: amr_finder/wf_amr_prot.cwl

Branch/Commit ID: master
workflow graph picard_markduplicates

Mark duplicates

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/picard_markduplicates.cwl

Branch/Commit ID: 1.0.5
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git

Path: preprocess_vcf.cwl

Branch/Commit ID: develop
workflow graph workflow-htcondorcern.cwl

https://github.com/reanahub/reana-demo-root6-roofit.git

Path: workflow/cwl/workflow-htcondorcern.cwl

Branch/Commit ID: master
workflow graph wgs alignment and germline variant detection

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/germline_wgs.cwl

Branch/Commit ID: downsample_and_recall