Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Unaligned bam to sorted, markduped bam

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/align_sort_markdup.cwl

Branch/Commit ID: low-vaf
workflow graph Filter single sample sv vcf from depth callers(cnvkit/cnvnator)

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/sv_depth_caller_filter.cwl

Branch/Commit ID: low-vaf
workflow graph umi molecular alignment workflow

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/molecular_alignment.cwl

Branch/Commit ID: low-vaf
workflow graph joint genotyping for trios or small cohorts

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/joint_genotype.cwl

Branch/Commit ID: low-vaf
workflow graph workflow.cwl

https://github.com/Andreja28/cloud-workflows.git

Path: cwl/bone-min-org-app/workflow.cwl

Branch/Commit ID: master
workflow graph exome alignment with qc, no bqsr, no verify_bam_id

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_exome_nonhuman.cwl

Branch/Commit ID: master
workflow graph umi molecular alignment workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/molecular_qc.cwl

Branch/Commit ID: downsample_and_recall
workflow graph Running cellranger count and lineage inference

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/single_cell_rnaseq.cwl

Branch/Commit ID: low-vaf
workflow graph record-output-wf_v1_1.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/record-output-wf_v1_1.cwl

Branch/Commit ID: main
workflow graph running cellranger mkfastq and count

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl

Branch/Commit ID: downsample_and_recall