Explore Workflows

a workflow that performs grep followed by sort

https://github.com/ResearchObject/runcrate.git

Path: tests/data/grepsort-run-1/snapshot/grepsort.cwl

Branch/Commit ID: main

ATAC-seq 04 quantification - SE

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/04-peakcall-se.cwl

Branch/Commit ID: master

Whole Exome Sequence analysis GATK4 Preprocessing

https://github.com/Duke-GCB/bespin-cwl.git

Path: workflows/exomeseq-gatk4.cwl

Branch/Commit ID: 66b46c15d266fdf6a1faabd8d2f1b257f3438efc

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/pindel_cat.cwl

Branch/Commit ID: low-vaf

This WPS workflow is designed to process ERA5 data, which is usually gathered as two sets of meteorological input grib files, atmosphere (3D data) and surface (2D data). This workflow does not include the geogrid step, that will need to be run separately. Required Inputs: * geo_em* input files (generated by geogrid) * 2 VTables, atmosphere and surface * 2 sets of Grib files, atmosphere and surface * 2 ungrib namelist files, atmosphere and surface * 1 metgrid namelist file Returns: * met_em* files for a single WRF simulation

https://github.com/UoMResearchIT/wrf_emep_cwl_linear_workflow.git

Path: workflows/wps_workflow.cwl

Branch/Commit ID: develop

https://github.com/WEHI-ResearchComputing/pdx-genome.git

Path: src/pdx-scatter.cwl

Branch/Commit ID: master

https://github.com/Marco-Salvi/cwl-test.git

Path: wf5201/ST520109.cwl

Branch/Commit ID: main

https://github.com/CS-SI/chronos-demo.git

Path: cwl/KARIN_HR.cwl

Branch/Commit ID: f4dff46

https://github.com/mskcc/pluto-cwl.git

Path: cwl/concat.cwl

Branch/Commit ID: master

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/sec-wf-out.cwl

Branch/Commit ID: main