Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph predict_proteins_assemblies.cwl

https://github.com/kinow/pipeline-v5.git

Path: workflows/subworkflows/assembly/cgc/predict_proteins_assemblies.cwl

Branch/Commit ID: eosc-life-gos
workflow graph workflow.cwl

https://github.com/screx/cwl-tutorial.git

Path: bioinformatics/tools/workflow.cwl

Branch/Commit ID: master
workflow graph ValidatePixelStatus

Validate pixel on/off status (disabled or broken pixels / channels)

 https://github.com/gammasim/workflows.git

Path: workflows/ValidatePixelStatus.cwl

Branch/Commit ID: main
workflow graph cnv_codex

CNV CODEX calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/abstract_operations/subworkflows/cnv_codex.cwl

Branch/Commit ID: master
workflow graph wgs alignment and germline variant detection

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/pipelines/germline_wgs.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph Long-covid.cwl

https://github.com/cwlviewer-test/Long-covid---aedea650-7a21-11ed-b9d2-e51f21933d80.git

Path: Long-covid.cwl

Branch/Commit ID: read-potential-cases-disc
workflow graph count-lines12-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines12-wf.cwl

Branch/Commit ID: main
workflow graph inpdir_update_wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/inpdir_update_wf.cwl

Branch/Commit ID: main
workflow graph Example of setting up a simulation system

Common Workflow Language example that illustrate the process of setting up a simulation system containing a protein, step by step, using the BioExcel Building Blocks library (biobb). The particular example used is the Lysozyme protein (PDB code 1AKI).

https://github.com/bioexcel/biobb_wf_cwl_tutorial.git

Path: biobb_wf_cwl_tutorial/examples/BioExcel-CWL-MDSetup.cwl

Branch/Commit ID: master
workflow graph pipeline-bam2vcf-distr.cwl

DNAseq pipeline from bam to vcf in distributed mode

 https://github.com/Sentieon/Sentieon-cwl.git

Path: pipeline/pipeline-bam2vcf-distr.cwl

Branch/Commit ID: master