Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Merge, annotate, and generate a TSV for SVs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 39ac49f5d080bbb6bfa97246f46a5b621254f622
	align_sort_sa	https://github.com/ncbi/pgap.git Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: 807fe40bca1fbd18ede6250851b9f71de98da69b
	maf2vcf_gz_workflow.cwl Workflow to convert a maf file into a vcf.gz with .tbi index	https://github.com/mskcc/pluto-cwl.git Path: cwl/maf2vcf_gz_workflow.cwl Branch/Commit ID: d8a8af9fdb69c0a4003680c1d3b96f35d5e48f0e
	chipseq-header.cwl	https://github.com/datirium/workflows.git Path: metadata/chipseq-header.cwl Branch/Commit ID: 93b844a80f4008cc973ea9b5efedaff32a343895
	heatmap-prepare.cwl Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order.	https://github.com/datirium/workflows.git Path: tools/heatmap-prepare.cwl Branch/Commit ID: 93b844a80f4008cc973ea9b5efedaff32a343895
	gp_makeblastdb	https://github.com/ncbi/pgap.git Path: progs/gp_makeblastdb.cwl Branch/Commit ID: 85e33a80019f8a630cb59ec6663ada7deb83e453
	taxcheck.cwl Perform taxonomic identification tasks on an input genome	https://github.com/ncbi/pgap.git Path: taxcheck.cwl Branch/Commit ID: 61eaea2f746c8a1fc2a2b731056b068e28ca4e20
	idr.cwl	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/ChIP-Seq/idr.cwl Branch/Commit ID: 3b9736a19eed3efc8f6cc587df282aad4f50a2ee
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 76a35e7d885790f30559beb31f3b58770e343afd
	merge and annotate svs with population allele freq	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 76a35e7d885790f30559beb31f3b58770e343afd