Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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star-stringtie_wf_pe.cwl
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https://github.com/pitagora-network/pitagora-cwl.git
Path: workflows/star-stringtie/paired_end/star-stringtie_wf_pe.cwl Branch/Commit ID: master |
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compile1.cwl#main
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https://github.com/YangYang-Lcos/legacy.git
Path: workflows/compile/compile1.cwl Branch/Commit ID: master Packed ID: main |
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Unaligned BAM to BQSR
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: downsample_and_recall |
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Whole genome alignment and somatic variant detection
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: downsample_and_recall |
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exome alignment and somatic variant detection
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/somatic_exome_mouse.cwl Branch/Commit ID: downsample_and_recall |
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Detect Variants workflow for WGS pipeline
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/detect_variants_wgs.cwl Branch/Commit ID: low-vaf |
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wgs alignment and tumor-only variant detection
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/tumor_only_wgs.cwl Branch/Commit ID: downsample_and_recall |
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Whole Exome Sequencing
Whole Exome Sequence analysis using GATK best practices - Germline SNP & Indel Discovery |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/exomeseq.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: main |
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02-trim-se.cwl
ChIP-seq 02 trimming - reads: SE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/02-trim-se.cwl Branch/Commit ID: master |
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WGS QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: c235dc6d623879a6c4f5fb307f545c9806eb2d23 |
