Explore Workflows
View already parsed workflows here or click here to add your own
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snapanalysis_setup_and_analyze.cwl
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Path: steps/snapanalysis_setup_and_analyze.cwl Branch/Commit ID: bb023f9 |
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fail-unconnected.cwl
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Path: v1.0/v1.0/fail-unconnected.cwl Branch/Commit ID: master |
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biowardrobe_chipseq_se.cwl
The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files. |
Path: biowardrobe_chipseq_se.cwl Branch/Commit ID: master |
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PGAP Pipeline, simple user input, PGAPX-134
PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template) |
Path: pgap.cwl Branch/Commit ID: master |
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bacterial_orthology
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Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: dev |
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assemble.cwl
Assemble a set of reads using SKESA |
Path: assemble.cwl Branch/Commit ID: test |
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SetParameterFromExternal
Receive parameter update (e.g., by querying an external source like a configuration or calibration database) or by expert input (e.g., by a member of a telescope team or a simulation pipeline expert). |
Path: workflows/SetParameterFromExternal.cwl Branch/Commit ID: main |
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Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
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Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: test |
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scatter2.cwl
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Path: tests/wf/scatter2.cwl Branch/Commit ID: main |
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emblem_textures.cwl
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Path: textures/emblem_textures.cwl Branch/Commit ID: cwl |
