Explore Workflows
View already parsed workflows here or click here to add your own
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/FarahZKhan/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-single.cwl Branch/Commit ID: master |
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EMG pipeline v3.0 (single end version)
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 5833078 |
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minibam_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/david4096/OxoG-Dockstore-Tools.git
Path: minibam_sub_wf.cwl Branch/Commit ID: develop |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 5833078 |
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fasta2taxa-plot
Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots. |
https://github.com/MG-RAST/qiime-pipeline.git
Path: CWL/Workflows/qiime/join-reads2plot.cwl Branch/Commit ID: master |
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bird_scatter_values.cwl
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https://github.com/ReddyLab/bird-workflow.git
Path: 03_bird_scatter_values/bird_scatter_values.cwl Branch/Commit ID: main |
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if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl Branch/Commit ID: 0.5.0 |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 43d2fb8 |
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Chipseq alignment with qc and creating homer tag directory
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/chipseq.cwl Branch/Commit ID: downsample_and_recall |
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bwameth_singlelib.cwl
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https://github.com/ifishlin/Benchmarking_CWL.git
Path: workflows/bwameth/bwameth_singlelib.cwl Branch/Commit ID: main |
