Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph run_total.cwl

https://github.com/rosafilgueira/DARE_SEISMO.git

Path: processing_elements/CWL_total_staged/run_total.cwl

Branch/Commit ID: master
workflow graph exome alignment and germline variant detection

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/germline_exome_gvcf.cwl

Branch/Commit ID: low-vaf
workflow graph download_pheno.cwl

https://github.com/Christensen-Lab-Dartmouth/PyMethylProcess.git

Path: cwl/workflows/download_pheno.cwl

Branch/Commit ID: master
workflow graph 04-peakcall-se.cwl

ATAC-seq 04 quantification - SE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/04-peakcall-se.cwl

Branch/Commit ID: master
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: 85892d9
workflow graph module-2.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/module-2.cwl

Branch/Commit ID: master
workflow graph Exome QC workflow

https://github.com/genome/analysis-workflows.git

Path: qc/workflow_exome.cwl

Branch/Commit ID: toil_compatibility
workflow graph Filter single sample sv vcf from paired read callers(Manta/Smoove)

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/sv_paired_read_caller_filter.cwl

Branch/Commit ID: low-vaf
workflow graph Unaligned bam to sorted, markduped bam

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/align_sort_markdup.cwl

Branch/Commit ID: low-vaf
workflow graph Filter single sample sv vcf from depth callers(cnvkit/cnvnator)

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/sv_depth_caller_filter.cwl

Branch/Commit ID: low-vaf