Explore Workflows
View already parsed workflows here or click here to add your own
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wf-variantcall.cwl
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Path: NA12878-chr20/NA12878-platinum-chr20-workflow-arvados/wf-variantcall.cwl Branch/Commit ID: master |
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compile1.cwl#main
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Path: workflows/compile/compile1.cwl Branch/Commit ID: feature/feature-GATK-Yassine Packed ID: main |
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Unaligned BAM to BQSR and VCF
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Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: No_filters_detect_variants |
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step-valuefrom4-wf.cwl
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Path: tests/step-valuefrom4-wf.cwl Branch/Commit ID: master |
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workflow.cwl
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Path: cwl/ArtreatPakAthero/workflow.cwl Branch/Commit ID: master |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
Path: zip_and_index_vcf.cwl Branch/Commit ID: develop |
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gpas_gatk4.2.4.1_mutect2_tumor_only_workflow.cwl
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Path: gatk4-mutect2-tumor-only-cwl/gpas_gatk4.2.4.1_mutect2_tumor_only_workflow.cwl Branch/Commit ID: master |
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contig construction and protein prediction
\"This workflow performs construction of metagenomic contigs and prediction protein sequences for metagenomic contigs. It executes 2 processes: contig construction and protein prediction. related CWL file: ./Tools/01_megahit.cwl ./Tools/02_rename.cwl ./Tools/03_seqkit_stats.cwl ./Tools/04_prodigal.cwl\" |
Path: Workflow/megahit_prodigal_sw.cwl Branch/Commit ID: main |
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bwa_mem
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Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl Branch/Commit ID: 1.0.7 |
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Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
Path: Ambarish_Kumar_SOP/CWL/Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl Branch/Commit ID: main |
