Explore Workflows
View already parsed workflows here or click here to add your own
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wf-variantcall.cwl
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Path: wes-agha-test/wes_chr21_test-workflow-gcp/wf-variantcall.cwl Branch/Commit ID: master |
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wf-variantcall.cwl
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Path: NA12878-chr20/NA12878-platinum-chr20-workflow/wf-variantcall.cwl Branch/Commit ID: master |
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ACCESS_pipeline.cwl
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Path: workflows/ACCESS_pipeline.cwl Branch/Commit ID: master |
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bulk_process.cwl
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Path: steps/bulk_process.cwl Branch/Commit ID: develop |
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qiime2 diversity analyses
Alpha and beta diversity analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
Path: packed/qiime2-step3-alpha-analysis.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-06-alpha-beta-diversity.cwl |
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download_gtf.cwl
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Path: workflow/download_gtf.cwl Branch/Commit ID: master |
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cnv_exomedepth
CNV ExomeDepth calling |
Path: structuralvariants/subworkflows/cnv_exome_depth.cwl Branch/Commit ID: 3bb03c9b |
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FragPipe: TMT Integrator and QC
This workflow step executes TMT-Integrator using the report tables generated by Philosopher. The program applies a series of statistical filters, and high-quality thresholds to filter the data. Summary report tables are created containing peptides, proteins, genes, and phosphosites (only for phospho-enriched data sets). |
Path: FragPipe-TMT-Integrator-and-QC/fragpipe-tmt-integrator-and-qc.cwl Branch/Commit ID: main |
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Single-cell Multiome ATAC and RNA-Seq Analyze
Single-cell Multiome ATAC and RNA-Seq Analyze Runs filtering, normalization, scaling, integration (optionally) and clustering for a single or aggregated single-cell Multiome ATAC and RNA-Seq datasets. |
Path: workflows/sc-multiome-analyze-wf.cwl Branch/Commit ID: main |
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hi-c-processing-pairs-nonorm.cwl
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Path: cwl_awsem_v1/hi-c-processing-pairs-nonorm.cwl Branch/Commit ID: master |
