Explore Workflows

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: oxog_sub_wf.cwl

Branch/Commit ID: 1.0.0

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/facets.cwl

Branch/Commit ID: 2.4.x

The BD Rhapsody™ WTA Analysis Pipeline is used to create sequencing libraries from single cell transcriptomes without having to specify a targeted panel. After sequencing, the analysis pipeline takes the FASTQ files, a reference genome file and a transcriptome annotation file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file.

https://github.com/GeorgeAlehandro/cwl_1_11.git

Path: workflow1_11.cwl

Branch/Commit ID: main

Packed ID: main

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/workflow_inputs.cwl

Branch/Commit ID: main

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/iwdr_with_nested_dirs.cwl

Branch/Commit ID: master

Receive parameter update (e.g., by querying an external source like a configuration or calibration database) or by expert input (e.g., by a member of a telescope team or a simulation pipeline expert).

https://gitlab.desy.de/gernot.maier/cwlsandbox.git

Path: workflows/SetParameterFromExternal.cwl

Branch/Commit ID: main

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/wf-loadContents2.cwl

Branch/Commit ID: main

https://github.com/RenskeW/cwlprov-provenance.git

Path: sl_prov_question/scenario3/wf3.cwl

Branch/Commit ID: main

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v4-paired.cwl

Branch/Commit ID: master

https://github.com/yyoshiaki/VIRTUS2.git

Path: workflow/VIRTUS.SE.cwl

Branch/Commit ID: master