Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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oxog_varbam_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git
Path: oxog_varbam_annotate_wf.cwl Branch/Commit ID: 1.0.0 |
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Varscan Workflow
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https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: master |
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pass-unconnected.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/pass-unconnected.cwl Branch/Commit ID: main |
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01-qc-se.cwl
RNA-seq 01 QC - reads: SE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/01-qc-se.cwl Branch/Commit ID: master |
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transcriptome-assembly.cwl
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https://github.com/pitagora-network/DAT2-cwl.git
Path: workflow/transcriptome-assembly/transcriptome-assembly.cwl Branch/Commit ID: main |
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bam to trimmed fastqs and HISAT alignments
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https://github.com/genome/cancer-genomics-workflow.git
Path: rnaseq/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: toil_compatibility |
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scRNA-seq pipeline using Salmon and Alevin
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: c502823 |
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workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_md5checksums/workflow.cwl Branch/Commit ID: master |
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Detect Variants workflow
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https://github.com/ChrisMaherLab/PACT.git
Path: pipelines/snv_indel_post_processing.cwl Branch/Commit ID: master |
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03-map-pe-blacklist-removal.cwl
ATAC-seq 03 mapping - reads: PE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/03-map-pe-blacklist-removal.cwl Branch/Commit ID: v1.0.0 |
