Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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rna amplicon analysis for fastq files
RNAs - qc, preprocess, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/amplicon-fastq.workflow.cwl Branch/Commit ID: master |
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An example tool demonstrating workflows.
Note that this is an example and the metadata is not necessarily consistent. |
https://github.com/eritema/cwlExamples.git
Path: Example15/ex15.cwl Branch/Commit ID: master |
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bams2gvcf.woBQSR_female.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/bams2gvcf.woBQSR_female.cwl Branch/Commit ID: master |
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01-qc-pe.cwl
ATAC-seq 01 QC - reads: PE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/01-qc-pe.cwl Branch/Commit ID: v1.0.0 |
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A workflow that aligns a fasta file and provides statistics on the SAM file
A workflow that aligns a fasta file and provides statistics on the SAM file |
https://github.com/dockstore/bcc2020-training.git
Path: cwl-training/exercise3/solution/align_and_metrics.cwl Branch/Commit ID: master |
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fasta2taxa-plot
Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots. |
https://github.com/MG-RAST/qiime-pipeline.git
Path: CWL/Workflows/qiime/join-reads2reference2plot.cwl Branch/Commit ID: master |
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tRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: 56dafa4 |
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wf.cwl#UncompressDatatables.cwl
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https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git
Path: wf.cwl Branch/Commit ID: main Packed ID: UncompressDatatables.cwl |
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steps.cwl
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https://github.com/DimitraPanou/scRNAseq-cwl.git
Path: subworkflows/steps.cwl Branch/Commit ID: 4e9c15b |
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exomeseq-03-organizedirectories.cwl
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https://github.com/duke-gcb/bespin-cwl.git
Path: subworkflows/exomeseq-03-organizedirectories.cwl Branch/Commit ID: gatk4-fixes |
