Explore Workflows
View already parsed workflows here or click here to add your own
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workflow1_11.cwl#SplitAndSubsample.cwl
SplitAndSubsample splits, subsamples and formats read files to be deposited in QualityFilter. |
Path: workflow1_11.cwl Branch/Commit ID: main Packed ID: SplitAndSubsample.cwl |
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workflow1_11.cwl#VDJ_GatherCalls.cwl
VDJ_GatherCalls collect the outputs from the multi-processed VDJ step into one file. |
Path: workflow1_11.cwl Branch/Commit ID: main Packed ID: VDJ_GatherCalls.cwl |
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protein annotation
Proteins - predict, filter, cluster, identify, annotate |
Path: CWL/Workflows/protein-filter-annotation.workflow.cwl Branch/Commit ID: master |
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pack.cwl
create textures and pack them to be a stellaris mod |
Path: pack/pack.cwl Branch/Commit ID: cwl |
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count-lines4-wf.cwl
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Path: tests/count-lines4-wf.cwl Branch/Commit ID: main |
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BD Rhapsody™ WTA Analysis Pipeline
The BD Rhapsody™ WTA Analysis Pipeline is used to create sequencing libraries from single cell transcriptomes without having to specify a targeted panel. After sequencing, the analysis pipeline takes the FASTQ files, a reference genome file and a transcriptome annotation file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file. |
Path: wf.cwl Branch/Commit ID: main Packed ID: main |
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tRNA_selection.cwl
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Path: tools/tRNA_selection.cwl Branch/Commit ID: d3b8e45 |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 5e82174 |
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pcawg_oxog_wf.cwl
This workflow will perform OxoG filtering on a set of VCFs. It will produce VCFs and their associated index files. |
Path: pcawg_oxog_wf.cwl Branch/Commit ID: develop |
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functional analysis prediction with InterProScan
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Path: workflows/functional_analysis.cwl Branch/Commit ID: ca6ca61 |
