Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph bam2fasta.cwl

https://github.com/arvados/bh20-seq-resource.git

Path: workflows/fastq2fasta/bam2fasta.cwl

Branch/Commit ID: master
workflow graph alignment_bwa_mem_prod.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/alignment_bwa_mem_prod.cwl

Branch/Commit ID: master
workflow graph preprocessor_for_oxog.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: preprocessor_for_oxog.cwl

Branch/Commit ID: 1.0.0
workflow graph Salmon quantification, FASTQ -> H5AD count matrix

https://github.com/lux563624348/WDL-HuBMAP-salmon-rnaseq.git

Path: steps/salmon-quantification.cwl

Branch/Commit ID: main
workflow graph final_filtering

Final filtering

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/final_filtering.cwl

Branch/Commit ID: 1.0.6
workflow graph composed_workflows.cwl

https://github.com/giannisdoukas/CWLJNIKernel.git

Path: tests/cwl/composed_workflows.cwl

Branch/Commit ID: master
workflow graph rp2-to-rp2path.cwl

https://github.com/alaninmcr/test-cwl.git

Path: workflows/rp2-to-rp2path.cwl

Branch/Commit ID: 98d5e21affae77ec12ecf300
workflow graph Preprocess fastq

Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed.

https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/preprocess-fastq.workflow.cwl

Branch/Commit ID: master
workflow graph HS Metrics workflow

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/hs_metrics.cwl

Branch/Commit ID: master
workflow graph Per-region pindel

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pindel_cat.cwl

Branch/Commit ID: master