Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Short read alignment pipeline

https://github.com/mruffalo/chromvar-cwl.git

Path: alignment-pipeline.cwl

Branch/Commit ID: master
workflow graph validate_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/validate_interleaved_fq.cwl

Branch/Commit ID: 0.2.3
workflow graph combine_counts.cwl

Combines read counts (generated by the 01_mpileups workflow) from multiple files into one file.

https://github.com/ReddyLab/bird-workflow.git

Path: 02_combine_counts/combine_counts.cwl

Branch/Commit ID: main
workflow graph conflict.cwl#main

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/conflict.cwl

Branch/Commit ID: 766d58b47180d92618074679eb9f3c6c30acf638

Packed ID: main
workflow graph abra_workflow.cwl

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/ABRA/abra_workflow.cwl

Branch/Commit ID: 0.0.33_dmp
workflow graph Uses Bruker TopSpin to convert a zipped NMR data directory to JCAMP-DX

https://github.com/NFDI4Chem/formaTAPIRest.git

Path: cwl/zipped2bruker2jcamp.cwl

Branch/Commit ID: main
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/icgc-tcga-pancancer/pcawg-minibam.git

Path: preprocess_vcf.cwl

Branch/Commit ID: master
workflow graph bam_filtering

BAM filtering

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bam_filtering.cwl

Branch/Commit ID: 1.0.7
workflow graph Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_bacterial_annot_pass4.cwl

Branch/Commit ID: test
workflow graph pipeline.cwl

https://github.com/hubmapconsortium/celldive-pipeline.git

Path: pipeline.cwl

Branch/Commit ID: cd2f15f