Explore Workflows

This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol)

https://github.com/YeoLab/eclip.git

Path: cwl/wf_fastqc.cwl

Branch/Commit ID: master

Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed)

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl

Branch/Commit ID: master

This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/dockstore-testing/md5sum-checker.git

Path: checker-workflow-wrapping-tool.cwl

Branch/Commit ID: develop

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: ca6ca61

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 1b0851e

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/import_schema-def.cwl

Branch/Commit ID: master

This is a subworkflow - this is not meant to be run as a stand-alone workflow!

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: oxog_sub_wf.cwl

Branch/Commit ID: 1.0.0

https://github.com/idaks/cwl_modeling.git

Path: yw_cwl_modeling/yw2cwl_parser/example_sql/get_itrdb_data/wf_get_itrdb_data.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 3b602cb

https://github.com/inutano/sra-star-rsem.git

Path: analysis/processing/readcount/cwl/rsem_from_sra_wf.cwl

Branch/Commit ID: master