Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Bisulfite QC tools	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: 4bc0a4577d626b65a4b44683e5a1ab2f7d7faf4c
	preprocess fasta Remove reads from fasta files based on sequence stats. Return fasta files with reads passed and reads removed.	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/preprocess-fasta.workflow.cwl Branch/Commit ID: f5839797da8209a9d3e441023f88130219751020
	Bisulfite QC tools	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: c711498c04d6b8ddf92ddceb6219f074765f7993
	module-1.cwl	https://github.com/andurill/ACCESS-Pipeline.git Path: workflows/module-1.cwl Branch/Commit ID: f874bd8a9bb7da9839f0aa6be708d5d16f72945d
	metabarcode (gene amplicon) analysis for fastq files protein - qc, preprocess, annotation, index, abundance	https://github.com/MG-RAST/pipeline.git Path: CWL/Workflows/metabarcode-fastq.workflow.cwl Branch/Commit ID: f5839797da8209a9d3e441023f88130219751020
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: aba52e94b6d7470132d3c092c26d67e29d615300
	gp_makeblastdb	https://github.com/ncbi/pgap.git Path: progs/gp_makeblastdb.cwl Branch/Commit ID: c17cac4c046f8ba2b8574a121c44a72d2e6b27e6
	wf.cwl#VDJ_GatherCalls.cwl VDJ_GatherCalls collect the outputs from the multi-processed VDJ step into one file.	https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git Path: wf.cwl Branch/Commit ID: c8d75785fd6accf3b47d1f9ee056675611e22e61 Packed ID: VDJ_GatherCalls.cwl
	wf.cwl#VDJ_Preprocess_Reads.cwl	https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git Path: wf.cwl Branch/Commit ID: c8d75785fd6accf3b47d1f9ee056675611e22e61 Packed ID: VDJ_Preprocess_Reads.cwl
	zip_and_index_vcf.cwl This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.	https://github.com/david4096/OxoG-Dockstore-Tools.git Path: zip_and_index_vcf.cwl Branch/Commit ID: 6366ed398da10019b6d81a789291af6d909f28f4