Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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CODEX analysis pipeline using Cytokit
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https://github.com/hubmapconsortium/codex-pipeline.git
Path: steps/illumination_first_stitching.cwl Branch/Commit ID: 16794b6 |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: downsample_and_recall |
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apply_cal.cwl
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https://github.com/peijin94/LOFAR-Sun-tools.git
Path: utils/IM/LINC/lincSun/workflow/apply_cal.cwl Branch/Commit ID: master |
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bwa_index
Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_index.cwl Branch/Commit ID: 1.0.6 |
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minibam_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git
Path: minibam_sub_wf.cwl Branch/Commit ID: 1.0.0 |
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<YOUR CHALLENGE> Evaluation
BRIEF DESCRIPTION ABOUT THE CHALLENGE, e.g. This workflow will run and evaluate Docker submissions to the Awesome Challenge (syn123). Metrics returned are x, y, z. |
https://github.com/osmaoui/model-to-data-challenge-workflow.git
Path: workflow.cwl Branch/Commit ID: main |
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wf-alignment.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: giab-chm/giab-chm-workflow/wf-alignment.cwl Branch/Commit ID: master |
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bam_filtering
BAM filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bam_filtering.cwl Branch/Commit ID: master |
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manta.cwl
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https://github.com/mskcc/ACCESS-Pipeline.git
Path: workflows/subworkflows/manta.cwl Branch/Commit ID: master |
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bwameth_singlelib_start_with_trimmed.cwl
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https://github.com/ifishlin/Benchmarking_CWL.git
Path: workflows/bwameth/bwameth_singlelib_start_with_trimmed.cwl Branch/Commit ID: main |
