Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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pcawg_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git
Path: pcawg_annotate_wf.cwl Branch/Commit ID: develop |
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post-correct-test-files.cwl
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https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/post-correct-test-files.cwl Branch/Commit ID: master |
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topmed-alignment-checker.cwl
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https://github.com/stain/topmed-workflows.git
Path: aligner/sbg-alignment-cwl/topmed-alignment-checker.cwl Branch/Commit ID: namespaces |
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pcr-bottleneck-coef.cwl
ChIP-seq - map - PCR Bottleneck Coefficients |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/map/pcr-bottleneck-coef.cwl Branch/Commit ID: v1.0 |
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Produce a list of residue-mapped structural domain instances from Pfam ids
Retrieve and process the PDB structures corresponding to the Pfam family ids resulting in a list of residue-mapped structural domain instances along with lost structural instances (requires Data/pdbmap downloaded from Pfam and uses SIFTS resource for UniProt to PDB residue Mapping) |
https://gitlab.inria.fr/capsid.public_codes/CroMaSt.git
Path: Tools/resmapping_pfam_instances_subwf.cwl Branch/Commit ID: main |
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WGS and MT analysis for fastq files
rna / protein - qc, preprocess, filter, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/wgs-noscreen-fasta.workflow.cwl Branch/Commit ID: master |
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EMG pipeline v3.0 (paired end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: 2104dc3 |
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ACTseq_spike_in.cwl
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https://github.com/CompEpigen/ChIPseq_workflows.git
Path: CWL/workflows/ACTseq_spike_in.cwl Branch/Commit ID: master |
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process VCF workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: downsample_and_recall |
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tRNA_selection.cwl
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: ca6ca613 |
