Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bam_filtering
BAM filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bam_filtering.cwl Branch/Commit ID: 1.0.7 |
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Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: test |
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pipeline.cwl
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https://github.com/hubmapconsortium/celldive-pipeline.git
Path: pipeline.cwl Branch/Commit ID: cd2f15f |
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exome alignment and tumor-only variant detection
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/pipelines/exome.cwl Branch/Commit ID: No_filters_detect_variants |
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qc_workflow.cwl
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https://github.com/mskcc/ACCESS-Pipeline.git
Path: workflows/QC/qc_workflow.cwl Branch/Commit ID: master |
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BD Rhapsody™ WTA Analysis Pipeline
The BD Rhapsody™ WTA Analysis Pipeline is used to create sequencing libraries from single cell transcriptomes without having to specify a targeted panel. After sequencing, the analysis pipeline takes the FASTQ files, a reference genome file and a transcriptome annotation file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file. |
https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git
Path: wf.cwl Branch/Commit ID: main Packed ID: main |
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helloworld.cwl
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https://github.com/reanahub/reana-demo-helloworld.git
Path: workflow/cwl/helloworld.cwl Branch/Commit ID: master |
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gathered exome alignment and somatic variant detection for cle purpose
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/somatic_exome_cle_gathered.cwl Branch/Commit ID: downsample_and_recall |
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trnascan_wnode and gpx_qdump combined
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https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_scan_and_dump.cwl Branch/Commit ID: dev |
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step_valuefrom5_wf_v1_0.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/step_valuefrom5_wf_v1_0.cwl Branch/Commit ID: aa13f7bad47e8df2349bdebd163e1830537d7f93 |
