Explore Workflows

https://github.com/ncbi/pgap.git

Path: wf_bacterial_prot_src.cwl

Branch/Commit ID: test

https://github.com/kbnlresearch/ochre.git

Path: ochre/cwl/word-mapping-test-files-wf.cwl

Branch/Commit ID: master

Packed ID: align-texts-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines16-wf.cwl

Branch/Commit ID: master

https://github.com/common-workflow-library/bio-cwl-tools.git

Path: bwa/BWA-Mem2-single.cwl

Branch/Commit ID: release

\"This workflow performs construction of metagenomic contigs and prediction protein sequences for metagenomic contigs. It executes 2 processes: contig construction and protein prediction. related CWL file: ./Tools/01_megahit.cwl ./Tools/02_rename.cwl ./Tools/03_seqkit_stats.cwl ./Tools/04_prodigal.cwl\"

https://github.com/RyoMameda/ComplexMicrobiome_GeneExpression_CWL.git

Path: Workflow/megahit_prodigal_sw.cwl

Branch/Commit ID: main

https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2.git

Path: PreProcessing/batch-preprocess-ont.cwl

Branch/Commit ID: preprocessing

Workflow to build different indices for different tools from a genome and transcriptome. This workflow expects an (annotated) genome in GBOL ttl format. Steps: - SAPP: rdf2gtf (genome fasta) - SAPP: rdf2fasta (transcripts fasta) - STAR index (Optional for Eukaryotic origin) - bowtie2 index - kallisto index

https://git.wageningenur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_indexbuilder.cwl

Branch/Commit ID: master

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/ChIP-Seq/idr-no-pooled.cwl

Branch/Commit ID: master

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 8515542

https://github.com/RenskeW/cwlprov-provenance.git

Path: sl_prov_question/scenario3/wf3.cwl

Branch/Commit ID: main