Explore Workflows
View already parsed workflows here or click here to add your own
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BD Rhapsody™ Sequence Analysis Pipeline
The BD Rhapsody™ assays are used to create sequencing libraries from single cell transcriptomes. After sequencing, the analysis pipeline takes the FASTQ files and a reference file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file. |
https://github.com/Chi-CRL/cwl_check_workflow.git
Path: rhapsody_pipeline_2.0.cwl Branch/Commit ID: main Packed ID: main |
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wgs alignment and germline variant detection
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https://github.com/genome/cancer-genomics-workflow.git
Path: germline_wgs_workflow.cwl Branch/Commit ID: toil_compatibility |
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wf-loadContents3.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/wf-loadContents3.cwl Branch/Commit ID: main |
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functional analysis prediction with InterProScan
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/functional_analysis.cwl Branch/Commit ID: 9c57dba |
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snaptools_create_snap_file.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/snaptools_create_snap_file.cwl Branch/Commit ID: 302f1f3 |
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02-peakcall.cwl
DNase-seq 02 quantification |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/DNase-seq_pipeline/02-peakcall.cwl Branch/Commit ID: master |
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env-wf1.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/env-wf1.cwl Branch/Commit ID: master |
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Run tRNAScan
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https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: master |
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birds.cwl
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https://github.com/EOSC-LOFAR/presto-cwl.git
Path: birds.cwl Branch/Commit ID: visualise |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 71d9c83 |
