Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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rhapsody_targeted_1.9-beta.cwl#UncompressDatatables.cwl
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https://github.com/longbow0/cwl.git
Path: v1.9-beta/rhapsody_targeted_1.9-beta.cwl Branch/Commit ID: master Packed ID: UncompressDatatables.cwl |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: No_filters_detect_variants |
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exome alignment with qc
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: low-vaf |
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fp_filter workflow
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https://github.com/ChrisMaherLab/PACT.git
Path: subworkflows/fp_filter.cwl Branch/Commit ID: master |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 1b0851e |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git
Path: preprocess_vcf.cwl Branch/Commit ID: master |
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sum-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/sum-wf.cwl Branch/Commit ID: main |
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prefactor.cwl
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https://github.com/EOSC-LOFAR/prefactor-cwl.git
Path: prefactor.cwl Branch/Commit ID: master |
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annotator_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git
Path: annotator_sub_wf.cwl Branch/Commit ID: develop |
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repliseq-parta.cwl
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https://github.com/mr-c/4dn-dcic-pipelines-cwl.git
Path: cwl_awsem_v1/repliseq/repliseq-parta.cwl Branch/Commit ID: master |
