Explore Workflows

Mark duplicates

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/picard_markduplicates.cwl

Branch/Commit ID: 1.0.9

https://github.com/yeolab/eclip.git

Path: cwl/wf_trim_partial_and_map_se_scatter.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: f914942

https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git

Path: steps/qc.cwl

Branch/Commit ID: master

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: caea457

Downloads data based on an array of strings representing rest urls and a curl download workflow.

https://github.com/andrejsim/epos-cwl-workflows.git

Path: epos_accept_url_array_scatter.cwl

Branch/Commit ID: master

Option 2: Deblur from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-deblur.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-03-deblur.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl

Branch/Commit ID: develop

A workflow that aligns a fasta file and provides statistics on the SAM file

https://github.com/dockstore/bcc2020-training.git

Path: cwl-training/exercise3/solution/align_and_metrics.cwl

Branch/Commit ID: master

This workflow is intended to be used to test the QC module, without having to run the long waltz step

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/QC/qc_workflow_wo_waltz.cwl

Branch/Commit ID: master