Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Unaligned BAM to BQSR and VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: ae79bc51e8b502164dbe74ea3b068d6d4d36a1f8 |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: ae79bc51e8b502164dbe74ea3b068d6d4d36a1f8 |
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Exome QC workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
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Unaligned bam to sorted, markduped bam
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
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Raw sequence data to BQSR
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
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Exome QC workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
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exome alignment with qc
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
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Detect Variants workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
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methylCtools_trim_align_merge_sort_dedup.cwl
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https://github.com/ifishlin/Benchmarking_CWL.git
Path: workflows/methylCtools/tools/methylCtools_trim_align_merge_sort_dedup.cwl Branch/Commit ID: 1416ade270d1b990087e39c6680464c12cf564cc |
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Whole genome alignment and somatic variant detection
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: 0db1a5f1ceedd4416ac550787c27b99c87dbe985 |
