Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome_gvcf.cwl Branch/Commit ID: master |
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bam_readcount workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: master |
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scatter-valuefrom-wf5.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf5.cwl Branch/Commit ID: beab66d649dd3ee82a013322a5e830875e8556ba |
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pipeline-pe-blacklist-removal.cwl
ATAC-seq pipeline - reads: PE - with blacklist removal |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/pipeline-pe-blacklist-removal.cwl Branch/Commit ID: master |
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02-trim-pe.cwl
ChIP-seq 02 trimming - reads: PE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/02-trim-pe.cwl Branch/Commit ID: master |
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05-quantification.cwl
ChIP-seq - Quantification - samples: treatment |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/05-quantification.cwl Branch/Commit ID: master |
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Run genomic CMsearch (Rfam rRNA)
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https://github.com/ncbi/pgap.git
Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: test |
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pindel parallel workflow
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https://github.com/mnneveau/cancer-genomics-workflow.git
Path: pindel/workflow.cwl Branch/Commit ID: master |
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04-quantification-se-unstranded.cwl
RNA-seq 04 quantification |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/04-quantification-se-unstranded.cwl Branch/Commit ID: master |
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split-bams-by-strand-and-index.cwl
Split reads in a BAM file by strands and index forward and reverse output BAM files |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/quant/split-bams-by-strand-and-index.cwl Branch/Commit ID: master |
