Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Create target and anti-target files for CNA analysis	https://github.com/ChrisMaherLab/PACT.git Path: subworkflows/cnvkit_prep_regions.cwl Branch/Commit ID: 656d9ae18f164f983c5672bcf51037cd73309f4f
	Process cnvkit outputs	https://github.com/ChrisMaherLab/PACT.git Path: subworkflows/process_cnvkit_results.cwl Branch/Commit ID: 656d9ae18f164f983c5672bcf51037cd73309f4f
	Calculate reference coverage	https://github.com/ChrisMaherLab/PACT.git Path: subworkflows/cna_reference_coverage.cwl Branch/Commit ID: 656d9ae18f164f983c5672bcf51037cd73309f4f
	BwaAligner_1_0_0.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_somatic/cwl/tools/BwaAligner_1_0_0.cwl Branch/Commit ID: d1bcf010d5c39d5fc01b8862db4f258df7d4f65d
	exome alignment and germline variant detection, with optitype for HLA typing	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: 8da2b1cd6fa379b2c22baf9dad762d39630e6f46
	Seed Protein Alignments	https://github.com/ncbi/pgap.git Path: protein_alignment/wf_seed_1.cwl Branch/Commit ID: 96dbb414d287f4382e2d477fb1851aeaa5f14f2b
	Seed Search Compartments	https://github.com/ncbi/pgap.git Path: protein_alignment/wf_seed.cwl Branch/Commit ID: 96dbb414d287f4382e2d477fb1851aeaa5f14f2b
	func_summaries.cwl	https://github.com/EBI-Metagenomics/pipeline-v5.git Path: workflows/subworkflows/func_summaries.cwl Branch/Commit ID: a83ee883bb3c7480010fa952939fac771491ddf4
	Per-region pindel	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: 8da2b1cd6fa379b2c22baf9dad762d39630e6f46
	waltz_workflow_all_bams.cwl	https://github.com/andurill/ACCESS-Pipeline.git Path: workflows/waltz/waltz_workflow_all_bams.cwl Branch/Commit ID: f874bd8a9bb7da9839f0aa6be708d5d16f72945d