Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Transcripts annotation workflow
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https://github.com/stain/workflow-is-cwl.git
Path: workflows/TranscriptsAnnotation-i5only-wf.cwl Branch/Commit ID: avoid-spaces |
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deal_with_functional_annotation.cwl
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https://github.com/EBI-Metagenomics/pipeline-v5.git
Path: workflows/subworkflows/assembly/deal_with_functional_annotation.cwl Branch/Commit ID: master |
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LHCb MC workflow
This workflow is composed of 2 main steps that should generate 2 types of jobs: * MCSimulation (CommandLineTool): Gauss execution * MCReconstruction (Workflow): Boole, Moore, Brunel and DaVinci executions based on Gauss outputs |
https://github.com/aldbr/dirac-cwl-proto.git
Path: test/workflows/lhcb/description.cwl Branch/Commit ID: main |
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bulk scRNA-seq pipeline using Salmon
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: bulk-pipeline.cwl Branch/Commit ID: 536d6ed |
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Whole Exome Sequencing
Whole Exome Sequence analysis using GATK best practices - Germline SNP & Indel Discovery |
https://github.com/Duke-GCB/bespin-cwl.git
Path: workflows/exomeseq.cwl Branch/Commit ID: master |
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multiple.cwl
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https://github.com/gijzelaerr/spiel.git
Path: multiple.cwl Branch/Commit ID: tutorial |
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03-map-se-blacklist-removal.cwl
ATAC-seq 03 mapping - reads: SE - blacklist removal |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/03-map-se-blacklist-removal.cwl Branch/Commit ID: master |
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functional analysis prediction with InterProScan
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/functional_analysis.cwl Branch/Commit ID: ca6ca613 |
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inspect.cwl
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https://github.com/ska-sa/den.git
Path: cwl/workflows/inspect.cwl Branch/Commit ID: kat7-test |
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EMG pipeline v4.0 (single end version)
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https://github.com/FarahZKhan/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v4-single.cwl Branch/Commit ID: master |
