Explore Workflows
View already parsed workflows here or click here to add your own
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Genome conversion and annotation
Workflow for genome annotation from EMBL format |
https://gitlab.com/m-unlock/cwl.git
Path: cwl/workflows/workflow_sapp_microbes.cwl Branch/Commit ID: 50aaa5a89d0cd01c80d55fb68dd72708d3796503 |
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umi molecular alignment workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/molecular_alignment.cwl Branch/Commit ID: ec5355f335852e51c6938809c16ea1d230a3f983 |
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CreateSymlink-workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: CreateSymlink-workflow.cwl Branch/Commit ID: 5910b4d88aca172252d9102ddb610a7dc9e1347f |
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timelimit-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/timelimit-wf.cwl Branch/Commit ID: a0f2d38e37ff51721fdeaf993bb2ab474b17246b |
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align_sort_sa
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: 2c7879b47890b9300ab9b5ebd35e17372e077757 |
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mut.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/mut.cwl Branch/Commit ID: eba80916b5cde8bdbd56c077c94240ddf796a27b |
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Hello World
Outputs a message using echo |
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/hello-workflow.cwl Branch/Commit ID: 5c7799a145595323d0a8628be1fe0e24985e793a |
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gcaccess_from_list
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https://github.com/ncbi/pgap.git
Path: task_types/tt_gcaccess_from_list.cwl Branch/Commit ID: 23f0ee7a36649ab37cabdd9277b7c82d098be79c |
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Metagenomics workflow
Workflow for Metagenomics from raw reads to annotated bins. Steps: - workflow_quality.cwl: - FastQC (control) - fastp (trimming) - Diamond read blastx - Refseq - SEED - SAMSA2 processing - HUMAnN read annotation |
https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_metagenomics_read_annotation.cwl Branch/Commit ID: d6893a25b58b9b25fb76c5e060974b54d9eabc41 |
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pcawg_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git
Path: pcawg_annotate_wf.cwl Branch/Commit ID: b4a02b7ba5733b3cc5b84b79ab0634ff9e4d1aeb |
