Explore Workflows

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 3168316

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_for_a_corrupted_xam_file.cwl

Branch/Commit ID: develop

https://github.com/Marco-Salvi/cwl-ro-crate.git

Path: ST520117.cwl

Branch/Commit ID: main

The BD Rhapsody™ WTA Analysis Pipeline is used to create sequencing libraries from single cell transcriptomes without having to specify a targeted panel. After sequencing, the analysis pipeline takes the FASTQ files, a reference genome file and a transcriptome annotation file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file.

https://github.com/longbow0/cwl.git

Path: v1.8/rhapsody_wta_1.8.cwl

Branch/Commit ID: master

Packed ID: main

https://github.com/idaks/cwl_modeling.git

Path: yw_cwl_modeling/manual_paleocar_cwl_model/try_wf1.cwl

Branch/Commit ID: master

Star/HTSeq RNA Seq Pipeline

https://github.com/Duke-GCB/bespin-cwl.git

Path: workflows/rnaseq-pt1.cwl

Branch/Commit ID: master

DNAseq pipeline from bam to vcf in distributed mode

https://github.com/Sentieon/Sentieon-cwl.git

Path: pipeline/pipeline-bam2vcf-distr.cwl

Branch/Commit ID: master

https://github.com/mskcc/argos-cwl.git

Path: modules/pair/structural-variants-pair.cwl

Branch/Commit ID: master

https://github.com/genome/cancer-genomics-workflow.git

Path: rnaseq/bam_to_trimmed_fastq_and_hisat_alignments.cwl

Branch/Commit ID: toil_compatibility

ChIP-seq 03 mapping - reads: SE

https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ChIP-seq_pipeline/03-map-se.cwl

Branch/Commit ID: master