Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
simple_two_step.cwl
|
Path: blast-pipelines/simple_two_step.cwl Branch/Commit ID: master |
|
|
|
Per-chromosome pindel
|
Path: pindel/pindel_cat.cwl Branch/Commit ID: master |
|
|
|
Preprocess fastq
Remove and trim low quality reads from fastq files. Return fasta files with reads passed and reads removed. |
Path: CWL/Workflows/preprocess-fastq.workflow.cwl Branch/Commit ID: master |
|
|
|
RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
Path: workflows/rna-selector.cwl Branch/Commit ID: master |
|
|
|
tt_blastn_wnode
|
Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: test |
|
|
|
02-trim-se.cwl
ChIP-seq 02 trimming - reads: SE |
Path: v1.0/ChIP-seq_pipeline/02-trim-se.cwl Branch/Commit ID: master |
|
|
|
bam-bedgraph-bigwig.cwl
|
Path: subworkflows/bam-bedgraph-bigwig.cwl Branch/Commit ID: master |
|
|
|
Salmon quantification, FASTQ -> H5AD count matrix
|
Path: steps/salmon-quantification.cwl Branch/Commit ID: d71be68 |
|
|
|
grep-and-count.cwl
|
Path: workflows/presentation-demo/grep-and-count.cwl Branch/Commit ID: master |
|
|
|
split-bams-by-strand-and-index.cwl
Split reads in a BAM file by strands and index forward and reverse output BAM files |
Path: v1.0/quant/split-bams-by-strand-and-index.cwl Branch/Commit ID: master |
