Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph CNV_pipeline

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/workflow.cwl

Branch/Commit ID: 1.0.5
workflow graph beagle-imputation-per-region.cwl

https://github.com/hacchy1983/imputation-server-jp.git

Path: Workflows/beagle-imputation-per-region.cwl

Branch/Commit ID: main
workflow graph maf2vcf_gz_workflow.cwl

Workflow to convert a maf file into a vcf.gz with .tbi index

https://github.com/mskcc/pluto-cwl.git

Path: cwl/maf2vcf_gz_workflow.cwl

Branch/Commit ID: master
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: f993cad
workflow graph call_cnv.cwl

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/subworkflows/call_cnv.cwl

Branch/Commit ID: master
workflow graph WGS QC workflow

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/qc_wgs.cwl

Branch/Commit ID: low-vaf
workflow graph Filter single sample sv vcf from depth callers(cnvkit/cnvnator)

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/sv_depth_caller_filter.cwl

Branch/Commit ID: low-vaf
workflow graph optimal-pipeline-xml.cwl

https://github.com/MaastrichtU-IDS/OptimAL.git

Path: workflow/optimal-pipeline-xml.cwl

Branch/Commit ID: master
workflow graph Varscan Workflow

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/varscan_pre_and_post_processing.cwl

Branch/Commit ID: master
workflow graph gatk-4.0.0.0-joint-calling.cwl

https://github.com/wtsi-hgi/arvados-pipelines.git

Path: cwl/workflows/gatk-4.0.0.0-joint-calling.cwl

Branch/Commit ID: master