Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph workflow.cwl

https://github.com/aniewielska/rd_pipeline.git

Path: workflow.cwl

Branch/Commit ID: master
workflow graph preference-workflow.cwl

https://github.com/johnbradley/iMADS-worker.git

Path: predict_service/preference-workflow.cwl

Branch/Commit ID: master
workflow graph wf_full_IDR_pipeline_2inputs.cwl

The main workflow that: produces two reproducible peaks via IDR given two eCLIP samples (1 input, 1 IP each). runs the 'rescue ratio' statistic runs the 'consistency ratio' statistic

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_full_IDR_pipeline_2inputs.cwl

Branch/Commit ID: master
workflow graph hi-c-processing-pairs-nonorm.cwl

https://github.com/mr-c/4dn-dcic-pipelines-cwl.git

Path: cwl_awsem_v1/hi-c-processing-pairs-nonorm.cwl

Branch/Commit ID: dev2
workflow graph macs2.cwl

string

 https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/epigenome-chip-seq/macs2/macs2.cwl

Branch/Commit ID: main
workflow graph wf_rescue_ratio_2inputs.cwl

Calculates the rescue ratio (see Gabe's protocols paper), given two eCLIP IP samples and 2 size-matched input samples. Also returns the reproducible peaks given these two samples. This is different from the 1input workflow in that each INPUT is first merged together and is used downstream instead of the 1input version, which remains unmodified. Merged inputs are NOT used in calculating true reproducible peaks.

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_rescue_ratio_2inputs.cwl

Branch/Commit ID: master
workflow graph workflow_mock_ngtax.cwl

https://git.wageningenur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_mock_ngtax.cwl

Branch/Commit ID: master
workflow graph qiime2 diversity analyses

Alpha and beta diversity analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step3-alpha-analysis.cwl

Branch/Commit ID: qiime2-workflow

Packed ID: qiime2-06-alpha-beta-diversity.cwl
workflow graph WGS QC workflow mouse

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/qc_wgs_mouse.cwl

Branch/Commit ID: downsample_and_recall
workflow graph functional analysis prediction with InterProScan

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: master