Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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wgs alignment and germline variant detection
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https://github.com/genome/cancer-genomics-workflow.git
Path: wgs_workflow.cwl Branch/Commit ID: toil_compatibility |
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wf-variantcall.cwl
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https://github.com/bcbio/test_bcbio_cwl.git
Path: prealign/prealign-workflow/wf-variantcall.cwl Branch/Commit ID: master |
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geogrid_workflow.cwl
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https://github.com/UoMResearchIT/wrf_emep_cwl_linear_workflow.git
Path: workflows/geogrid_workflow.cwl Branch/Commit ID: develop |
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wf_fastqc.cwl
This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol) |
https://github.com/yeolab/eclip.git
Path: cwl/wf_fastqc.cwl Branch/Commit ID: master |
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pdf2wordcloud.cwl
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https://github.com/wilke/CWL-Quick-Start.git
Path: CWL/Workflows/pdf2wordcloud.cwl Branch/Commit ID: master |
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if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl Branch/Commit ID: 0.5.0 |
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Salmon quantification, FASTQ -> H5AD count matrix
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: steps/salmon-quantification.cwl Branch/Commit ID: f8ea70d |
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Apply filters to VCF file
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https://github.com/ChrisMaherLab/PACT.git
Path: subworkflows/filter_vcf.cwl Branch/Commit ID: master |
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bams2gvcf.woBQSR_female.multisamples.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/bams2gvcf.woBQSR_female.multisamples.cwl Branch/Commit ID: master |
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Filter single sample sv vcf from depth callers(cnvkit/cnvnator)
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: downsample_and_recall |
