Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Apply filters to VCF file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/filter_vcf_nonhuman.cwl

Branch/Commit ID: master
workflow graph alignment_prep.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/alignment_prep.cwl

Branch/Commit ID: master
workflow graph topmed-alignment-checker.cwl

https://github.com/FarahZKhan/topmed-workflows.git

Path: aligner/sbg-alignment-cwl/topmed-alignment-checker.cwl

Branch/Commit ID: cwlprov_testing
workflow graph methylCtools_multilib.cwl

https://github.com/ifishlin/Benchmarking_CWL.git

Path: workflows/methylCtools/methylCtools_multilib.cwl

Branch/Commit ID: main
workflow graph Unaligned BAM to BQSR

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/bam_to_bqsr.cwl

Branch/Commit ID: downsample_and_recall
workflow graph md5sum-workflow.cwl

https://github.com/dockstore-testing/md5sum-checker.git

Path: md5sum/md5sum-workflow.cwl

Branch/Commit ID: master
workflow graph steps.cwl

https://github.com/DimitraPanou/scRNAseq-cwl.git

Path: subworkflows/steps.cwl

Branch/Commit ID: b8e641c
workflow graph example.cwl

Example CWL workflow that uses some advanced features

https://github.com/mskcc/pluto-cwl.git

Path: cwl/example.cwl

Branch/Commit ID: master
workflow graph bam-genomecov-bigwig.cwl

creates genome coverage bigWig file from .bam file

 https://github.com/barski-lab/ga4gh_challenge.git

Path: workflows/bam-genomecov-bigwig.cwl

Branch/Commit ID: v0.0.2
workflow graph Produce a list of residue-mapped structural domain instances from CATH ids

Retrieve and process the PDB structures corresponding to the CATH superfamily ids resulting in a list of residue-mapped structural domain instances along with lost structural instances (requires Data/cath_domain_description_file.txt downloaded from CATH and uses SIFTS resource for PDB to UniProt residue Mapping)

https://gitlab.inria.fr/capsid.public_codes/CroMaSt.git

Path: Tools/resmapping_cath_instances_subwf.cwl

Branch/Commit ID: main