Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph emep_workflow.cwl

https://github.com/UoMResearchIT/wrf_emep_cwl_linear_workflow.git

Path: workflows/emep_workflow.cwl

Branch/Commit ID: develop
workflow graph wrf_workflow.cwl

https://github.com/UoMResearchIT/wrf_emep_cwl_linear_workflow.git

Path: workflows/wrf_workflow.cwl

Branch/Commit ID: develop
workflow graph wps_workflow.cwl

This WPS workflow is designed to process ERA5 data, which is usually gathered as two sets of meteorological input grib files, atmosphere (3D data) and surface (2D data). This workflow does not include the geogrid step, that will need to be run separately. Required Inputs: * geo_em* input files (generated by geogrid) * 2 VTables, atmosphere and surface * 2 sets of Grib files, atmosphere and surface * 2 ungrib namelist files, atmosphere and surface * 1 metgrid namelist file Returns: * met_em* files for a single WRF simulation

https://github.com/UoMResearchIT/wrf_emep_cwl_linear_workflow.git

Path: workflows/wps_workflow.cwl

Branch/Commit ID: develop
workflow graph pipeline.cwl

https://github.com/hubmapconsortium/azimuth-annotate.git

Path: pipeline.cwl

Branch/Commit ID: d1cc262
workflow graph hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather

https://github.com/ncbi/pgap.git

Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl

Branch/Commit ID: dev
workflow graph qiime2 create phylogenetic tree

Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-deblur.cwl

Branch/Commit ID: qiime2-workflow

Packed ID: qiime2-05-phylogeny.cwl
workflow graph EMG pipeline v3.0 (paired end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: 56dafa4
workflow graph access_qc.cwl

https://github.com/msk-access/qc_generation.git

Path: access_qc.cwl

Branch/Commit ID: develop
workflow graph running cellranger mkfastq and count

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl

Branch/Commit ID: low-vaf
workflow graph sc_atac_seq_initial_analysis.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/sc_atac_seq_initial_analysis.cwl

Branch/Commit ID: 06aeffe