Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bwa_index
Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_index.cwl Branch/Commit ID: 1.1.3 |
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Exome QC workflow
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: No_filters_detect_variants |
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count-lines10-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines10-wf.cwl Branch/Commit ID: master |
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Unaligned to aligned BAM
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/align.cwl Branch/Commit ID: downsample_and_recall |
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exome alignment with qc
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https://github.com/markrobbo/workflows.git
Path: workflows/hello/exome_alignment_packed.cwl Branch/Commit ID: master Packed ID: main |
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collate_unique_SSU_headers.cwl
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: master |
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02-trim-se.cwl
ChIP-seq 02 trimming - reads: SE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/02-trim-se.cwl Branch/Commit ID: master |
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CODEX analysis pipeline using Cytokit
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https://github.com/hubmapconsortium/codex-pipeline.git
Path: steps/ometiff_second_stitching.cwl Branch/Commit ID: no-gpu-for-cwl-vis-only |
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TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)
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https://github.com/EBI-Metagenomics/workflow-is-cwl.git
Path: workflows/TransDecoder-v5-wf-2steps.cwl Branch/Commit ID: assembly |
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EMG pipeline v3.0 (paired end version)
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: caea457 |
