Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Subworkflow to allow calling different SV callers which require bam files as inputs	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: 051074fce4afd9732ef34db9dd43d3a1d8e979d6
	exome alignment with qc, no bqsr, no verify_bam_id	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/exome_alignment_mouse.cwl Branch/Commit ID: e2a34d2b8c406db9aed8e49e8bdcf36f51444379
	Bisulfite QC tools	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: a3e26136043c03192c38c335316d2d36e3e67478
	Per-region pindel	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: f42c889734c8f709ad2fd9090493bcaac8326c98
	wgs alignment and tumor-only variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/tumor_only_wgs.cwl Branch/Commit ID: 42c66dd24ce5026d3f717214ddb18b7b4fae93cf
	umi duplex alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: c235dc6d623879a6c4f5fb307f545c9806eb2d23
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: b7d9ace34664d3cedb16f2512c8a6dc6debfc8ca
	paramref_arguments_self.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/paramref_arguments_self.cwl Branch/Commit ID: dbc4c4c2ad30ed31367b4fbcc3bb4084fdcabaa2
	Unaligned to aligned BAM	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align.cwl Branch/Commit ID: a3e26136043c03192c38c335316d2d36e3e67478
	THOR - differential peak calling of ChIP-seq signals with replicates What is THOR? -------------- THOR is an HMM-based approach to detect and analyze differential peaks in two sets of ChIP-seq data from distinct biological conditions with replicates. THOR performs genomic signal processing, peak calling and p-value calculation in an integrated framework. For more information please refer to: ------------------------------------- Allhoff, M., Sere K., Freitas, J., Zenke, M., Costa, I.G. (2016), Differential Peak Calling of ChIP-seq Signals with Replicates with THOR, Nucleic Acids Research, epub gkw680.	https://github.com/datirium/workflows.git Path: workflows/rgt-thor.cwl Branch/Commit ID: ebbf23764ede324cabc064bd50647c1f643726fa