Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Alignment without BQSR

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/sequence_to_bqsr_mouse.cwl

Branch/Commit ID: downsample_and_recall
workflow graph pipeline.cwl

https://github.com/nlesc-sherlock/deeplearning.git

Path: CWLworkflow/pipeline.cwl

Branch/Commit ID: master
workflow graph wgs alignment and germline variant detection

https://github.com/genome/cancer-genomics-workflow.git

Path: wgs_workflow.cwl

Branch/Commit ID: toil_compatibility
workflow graph Functional analyis of sequences that match the 16S SSU

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/16S_taxonomic_analysis.cwl

Branch/Commit ID: a8abd0e
workflow graph exomeseq.cwl#exomeseq-02-variantdiscovery.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/exomeseq.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: exomeseq-02-variantdiscovery.cwl
workflow graph sc_atac_seq_initial_analysis.cwl

https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git

Path: sc-atac-seq-pipeline/steps/sc_atac_seq_initial_analysis.cwl

Branch/Commit ID: 68e0cc1
workflow graph biowardrobe_chipseq_se.cwl

The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files.

https://github.com/Barski-lab/ga4gh_challenge.git

Path: biowardrobe_chipseq_se.cwl

Branch/Commit ID: master
workflow graph scatter GATK HaplotypeCaller over intervals

https://github.com/genome/cancer-genomics-workflow.git

Path: detect_variants/gatk_haplotypecaller_iterator.cwl

Branch/Commit ID: toil_compatibility
workflow graph Apply filters to VCF file

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/germline_filter_vcf.cwl

Branch/Commit ID: downsample_and_recall
workflow graph collate_unique_SSU_headers.cwl

https://github.com/FarahZKhan/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: master