Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Chipseq alignment with qc and creating homer tag directory
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/chipseq.cwl Branch/Commit ID: master |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 5833078 |
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pindel parallel workflow
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: low-vaf |
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dedup-3-pass-distr.cwl
run 3-pass dedup: algo LocusCollector + algo Dedup output_dup_read_name + algo Dedup dedup_by_read_name sequentially in distributed mode |
https://github.com/sentieon/sentieon-cwl.git
Path: stage/dedup-3-pass-distr.cwl Branch/Commit ID: master |
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count-lines5-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/count-lines5-wf.cwl Branch/Commit ID: main |
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annotator_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git
Path: annotator_sub_wf.cwl Branch/Commit ID: master |
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fusion_workflow.cwl
Fusion workflow, runs STARFusion and Arriba |
https://github.com/bd2kgenomics/dockstore_workflow_fusion.git
Path: fusion_workflow.cwl Branch/Commit ID: 1.0.0 |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: a8abd0e |
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EMG pipeline v3.0 (single end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 5833078 |
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basename-fields-test.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/basename-fields-test.cwl Branch/Commit ID: main |
