Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph hisat2_samtools_htseq-dexseq.stringtie-prepDE-DESeq2.cwl

https://github.com/rawgene/cwl.git

Path: workflows/hisat2_samtools_htseq-dexseq.stringtie-prepDE-DESeq2.cwl

Branch/Commit ID: master
workflow graph Chipseq alignment for nonhuman with qc and creating homer tag directory

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/chipseq_alignment_nonhuman.cwl

Branch/Commit ID: low-vaf
workflow graph Single-cell RNA-Seq Analyze

Single-cell RNA-Seq Analyze Runs filtering, normalization, scaling, integration (optionally) and clustering for a single or aggregated single-cell RNA-Seq datasets.

 https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-rna-analyze-wf.cwl

Branch/Commit ID: main
workflow graph Prepare user input

Prepare user input for NCBI-PGAP pipeline

 https://github.com/ncbi/pgap.git

Path: prepare_user_input2.cwl

Branch/Commit ID: test
workflow graph running cellranger mkfastq and count

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl

Branch/Commit ID: master
workflow graph wf-alignment.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: NA12878-chr20/NA12878-platinum-chr20-workflow-arvados/wf-alignment.cwl

Branch/Commit ID: master
workflow graph processing.cwl

https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git

Path: steps/processing.cwl

Branch/Commit ID: master
workflow graph sc_atac_seq_initial_analysis.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/sc_atac_seq_initial_analysis.cwl

Branch/Commit ID: 06aeffe
workflow graph count-lines6-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines6-wf.cwl

Branch/Commit ID: main
workflow graph hi-c-processing-pairs-nore-nonorm.cwl

https://github.com/4dn-dcic/pipelines-cwl.git

Path: cwl_awsem_v1/hi-c-processing-pairs-nore-nonorm.cwl

Branch/Commit ID: dev2