Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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FragPipe: ProteinProphet
This workflow step takes the PeptideProphet output files from the first step containing the peptide validation and calculates the protein inference using ProteinProphet. |
https://github.com/cwl-apps/fragpipe-proteomics-pipeline-tutorial.git
Path: FragPipe-ProteinProphet/fragpipe-proteinprophet.cwl Branch/Commit ID: main |
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salmon_wf_pe.cwl
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https://github.com/pitagora-network/pitagora-cwl.git
Path: workflows/salmon/paired_end/salmon_wf_pe.cwl Branch/Commit ID: master |
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protein similarities
run diamond on mutlple DBs and merge-sort results |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/protein-diamond.workflow.cwl Branch/Commit ID: master |
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exome alignment and somatic variant detection
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/somatic_exome_mouse.cwl Branch/Commit ID: downsample_and_recall |
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manyjobs.cwl
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https://github.com/fhembroff/wes-testing.git
Path: manyjobs/manyjobs.cwl Branch/Commit ID: main |
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cram_to_bam workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: cram_to_bam/workflow.cwl Branch/Commit ID: toil_compatibility |
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wf.cwl#VDJ_Preprocess_Reads.cwl
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https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git
Path: wf.cwl Branch/Commit ID: main Packed ID: VDJ_Preprocess_Reads.cwl |
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wf_contam_detect.cwl
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https://github.com/ncbi/pipelines.git
Path: contam_filter/wf_contam_detect.cwl Branch/Commit ID: master |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: master |
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chksum_seqval_wf_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_interleaved_fq.cwl Branch/Commit ID: 0.5.0 |
