Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph alignment for nonhuman with qc

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_wgs_nonhuman.cwl

Branch/Commit ID: master
workflow graph QIIME2 Step 2 (Deblur option)

QIIME2 Deblur, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-deblur.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: main
workflow graph 03-map-pe.cwl

STARR-seq 03 mapping - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/STARR-seq_pipeline/03-map-pe.cwl

Branch/Commit ID: master
workflow graph preference-workflow.cwl

https://github.com/johnbradley/imads-worker.git

Path: predict_service/preference-workflow.cwl

Branch/Commit ID: master
workflow graph Compute average of average per cross-mapped famil(y)ies

Compute average structure for all averaged structures corresponding to UniProt domain instances cross-mapped from Pfam/CATH to a CATH/Pfam family. First computes average per UniProt domain instance and then average all averaged structures per Pfam family.

https://gitlab.inria.fr/capsid.public_codes/CroMaSt.git

Path: Tools/other_avg_subwf.cwl

Branch/Commit ID: main
workflow graph spurious_annot pass2

https://github.com/ncbi/pgap.git

Path: spurious_annot/wf_spurious_annot_pass2.cwl

Branch/Commit ID: master
workflow graph Salmon quantification, FASTQ -> H5AD count matrix

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: steps/salmon-quantification.cwl

Branch/Commit ID: cee6caf
workflow graph mutect2_and_filter.cwl

Runs mutect2 variant calling and and variant filter.

 https://github.com/demichelislab/SPICE-pipeline-CWL.git

Path: cwl/workflows/mutect2_and_filter.cwl

Branch/Commit ID: main
workflow graph cmsearch-multimodel.cwl

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/cmsearch-multimodel.cwl

Branch/Commit ID: 5833078
workflow graph strelka workflow

https://github.com/genome/cancer-genomics-workflow.git

Path: strelka/workflow.cwl

Branch/Commit ID: toil_compatibility