Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph cnv_manta

CNV Manta calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/cnv_manta.cwl

Branch/Commit ID: master
workflow graph module-1-2-chunk

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/module-1-2.chunk.cwl

Branch/Commit ID: dev
workflow graph bwameth_align_merge_sort_dedup.cwl

https://github.com/ifishlin/Benchmarking_CWL.git

Path: workflows/bwameth/tools/bwameth_align_merge_sort_dedup.cwl

Branch/Commit ID: main
workflow graph genomics-workspace-cds.cwl

https://github.com/NAL-i5K/Organism_Onboarding.git

Path: flow_genomicsWorkspace/genomics-workspace-cds.cwl

Branch/Commit ID: master
workflow graph Bacterial Annotation, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_bacterial_annot_2nd_pass.cwl

Branch/Commit ID: test
workflow graph flagging.cwl

https://github.com/ska-sa/den.git

Path: cwl/workflows/flagging.cwl

Branch/Commit ID: kat7-test
workflow graph aggregate_visualize

https://github.com/msk-access/qc_generation.git

Path: access_qc__packed.cwl

Branch/Commit ID: develop

Packed ID: aggregate_visualize.cwl
workflow graph wf_trim_partial_and_map_se.cwl

This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment

https://github.com/yeolab/eclip.git

Path: cwl/wf_trim_partial_and_map_se.cwl

Branch/Commit ID: master
workflow graph wf-loadContents3.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/wf-loadContents3.cwl

Branch/Commit ID: main
workflow graph cond-wf-004.1.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/cond-wf-004.1.cwl

Branch/Commit ID: aa13f7bad47e8df2349bdebd163e1830537d7f93