Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Salmon quantification, FASTQ -> H5AD count matrix
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: salmon-rnaseq/steps/salmon-quantification.cwl Branch/Commit ID: a33bc8a |
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qiime2 DADA2 detect/correct sequence data
Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/duke-gcb/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-03-dada2.cwl |
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Chunked version of phmmer-v3.2.cwl
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https://github.com/EBI-Metagenomics/workflow-is-cwl.git
Path: workflows/phmmer-v3.2-chunked-wf.cwl Branch/Commit ID: assembly |
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module-3.cwl
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https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/module-3.cwl Branch/Commit ID: master |
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bwa_index
Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_index.cwl Branch/Commit ID: 1.0.5 |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: master |
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CODEX analysis pipeline using Cytokit
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https://github.com/hubmapconsortium/codex-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 2d9ddc6 |
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collect_pair_files.cwl
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https://github.com/mskcc/roslin-cwl.git
Path: modules/pair/collect_pair_files.cwl Branch/Commit ID: master |
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CompPASS-Plus_workflow.cwl
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https://github.com/adamscharlotte/CWL-workflow.git
Path: CompPASS-Plus_workflow.cwl Branch/Commit ID: master |
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hisat2_samtools_htseq-dexseq.stringtie-prepDE-DESeq2.cwl
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https://github.com/rawgene/cwl.git
Path: workflows/hisat2_samtools_htseq-dexseq.stringtie-prepDE-DESeq2.cwl Branch/Commit ID: master |
