Explore Workflows

create textures and pack them to be a stellaris mod

https://github.com/undu/stellaris-emblem-lab.git

Path: pack/pack.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_rRNA_headers.cwl

Branch/Commit ID: e1b0fce

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git

Path: pcawg_minibam_wf.cwl

Branch/Commit ID: develop

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/ocrevaluation-performance-wf.cwl

Branch/Commit ID: master

https://github.com/ncbi/pgap.git

Path: task_types/tt_gcaccess_from_list.cwl

Branch/Commit ID: dev

Copynumber variation workflow, runs ADTEx and Varscan

https://github.com/BD2KGenomics/dockstore_workflow_cnv.git

Path: cnv.cwl

Branch/Commit ID: v1.0.0

Create emblem textures

https://github.com/undu/stellaris-emblem-lab.git

Path: textures/textures.cwl

Branch/Commit ID: master

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: 1.0.0

https://github.com/hubmapconsortium/codex-pipeline.git

Path: steps/ometiff_second_stitching.cwl

Branch/Commit ID: no-gpu-for-cwl-vis-only

https://github.com/ncbi/pgap.git

Path: protein_alignment/wf_seed_seqids.cwl

Branch/Commit ID: master