Explore Workflows
View already parsed workflows here or click here to add your own
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merge and annotate svs with population allele freq
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: No_filters_detect_variants |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: low-vaf |
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VIRTUS.SE.singlevirus.cwl
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https://github.com/yyoshiaki/VIRTUS.git
Path: workflow/VIRTUS.SE.singlevirus.cwl Branch/Commit ID: master |
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compile1.cwl#main
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https://github.com/common-workflow-library/legacy.git
Path: workflows/compile/compile1.cwl Branch/Commit ID: master Packed ID: main |
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TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)
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https://github.com/mscheremetjew/workflow-is-cwl.git
Path: workflows/TransDecoder-v5-wf-2steps.cwl Branch/Commit ID: cwlexec |
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metabarcode (gene amplicon) analysis for fastq files
protein - qc, preprocess, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/metabarcode-fastq.workflow.cwl Branch/Commit ID: master |
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samtools_view_sam2bam
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: 3bb03c9b |
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nontrivial.cwl
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https://github.com/dockstore-testing/tooltester-wes-testing.git
Path: nontrivial/nontrivial.cwl Branch/Commit ID: stable-version-for-testing-v3 |
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sum-wf-noET.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/sum-wf-noET.cwl Branch/Commit ID: main |
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tRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: ef3c7b2 |
