Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 60edaf6f57eaaf02cda1a3d8cb9a825aa64a43e2
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: ce433f771ebf5677c9f40858e2ae91b1a7e75d30
	sec-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/sec-wf.cwl Branch/Commit ID: 280a852e74aec08cf79687e8004e17b1ab464534
	umi duplex alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: 31602b94b34ff55876147c7299e1bec47e8d1a31
	workflow-htcondorcern.cwl	https://github.com/reanahub/reana-demo-root6-roofit.git Path: workflow/cwl/workflow-htcondorcern.cwl Branch/Commit ID: 1fbe52138b98a85a15fde58d385b21b637c18be8
	chksum_seqval_wf_paired_fq.cwl	https://github.com/cancerit/workflow-seq-import.git Path: cwls/chksum_seqval_wf_paired_fq.cwl Branch/Commit ID: edef7383acae1215a34ddfa6388224570c582c9f
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 44ada20f3eeb59005d5bd999d2435102e9bae991
	group-isoforms-batch.cwl Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored.	https://github.com/datirium/workflows.git Path: tools/group-isoforms-batch.cwl Branch/Commit ID: ee66d03be8a7fd61367db40c37a973ff55ece4da
	count-lines8-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines8-wf.cwl Branch/Commit ID: 0e98de8f692bb7b9626ed44af835051750ac20cd
	taxcheck.cwl Perform taxonomic identification tasks on an input genome	https://github.com/ncbi/pgap.git Path: taxcheck.cwl Branch/Commit ID: be9d12a3f8e1924183a1dc6a0bda6ada4195ca71