Explore Workflows

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines1-wf-noET.cwl

Branch/Commit ID: master

https://github.com/Duke-GCB/bespin-cwl.git

Path: subworkflows/exomeseq-00-prepare-reference-data.cwl

Branch/Commit ID: gatk4-fixes

https://github.com/cr-ste-justine/chujs-alignment-workflow.git

Path: workflows/kf-cram2gvcf-custom.cwl

Branch/Commit ID: dev

https://github.com/sfu-ireceptor/AIRR-seqAA.git

Path: cwl/id_to_json_workflow.cwl

Branch/Commit ID: master

Validate camera charge response.

https://github.com/gammasim/workflows.git

Path: workflows/ValidateCameraChargeResponse.cwl

Branch/Commit ID: main

https://github.com/hubmapconsortium/sprm.git

Path: pipeline.cwl

Branch/Commit ID: d42d6f5

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v4-assembly-metaSPAdes.cwl

Branch/Commit ID: master

This is a workflow to go from UMI-tagged fastqs to standard bams. It does not include collapsing, or QC It does include modules 1 and 2

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/standard_pipeline.cwl

Branch/Commit ID: 0.0.33_dmp

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: 3f85843

This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/dockstore-testing/dockstore-workflow-md5sum-unified.git

Path: checker_workflow_wrapping_tool.cwl

Branch/Commit ID: develop