Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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protein similarities
run diamond on mutlple DBs and merge-sort results |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/protein-diamond.workflow.cwl Branch/Commit ID: master |
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scatter GATK HaplotypeCaller over intervals
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https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: master |
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pcawg_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git
Path: pcawg_annotate_wf.cwl Branch/Commit ID: 1.0.0 |
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oxog_varbam_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/svonworl/OxoG-Dockstore-Tools.git
Path: oxog_varbam_annotate_wf.cwl Branch/Commit ID: master |
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workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_dispatch/2working_files/workflow.cwl Branch/Commit ID: master |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 56dafa4 |
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EMG pipeline v3.0 (paired end version)
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: master |
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functional analysis prediction with InterProScan
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/functional_analysis.cwl Branch/Commit ID: 9c57dba |
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simple_two_step.cwl
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https://github.com/NCBI-Hackathons/BLAST-Pipelines-and-FAIR.git
Path: blast-pipelines/simple_two_step.cwl Branch/Commit ID: master |
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simple_two_step.cwl
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https://github.com/ncbi/cwl-demos.git
Path: blast-pipelines/simple_two_step.cwl Branch/Commit ID: master |
