Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph workflow.cwl

https://github.com/pegasus-isi/cwl-to-dax-reference.git

Path: compile-multipart-workflow/workflow.cwl

Branch/Commit ID: master
workflow graph gathered exome alignment and somatic variant detection for cle purpose

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/somatic_exome_cle_gathered.cwl

Branch/Commit ID: downsample_and_recall
workflow graph tRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 8515542
workflow graph Complex DAG

Non-linear combination of KnowEnG tools

 https://github.com/KnowEnG-Research/cwl-specification.git

Path: code/workflow.cwl

Branch/Commit ID: master
workflow graph ST520107.cwl

https://github.com/Marco-Salvi/cwl-test.git

Path: wf5201/ST520107.cwl

Branch/Commit ID: main
workflow graph tophat2-cufflinks_wf_se.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/tophat2-cufflinks/single_end/tophat2-cufflinks_wf_se.cwl

Branch/Commit ID: master
workflow graph Salmon quantification, FASTQ -> H5AD count matrix

https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git

Path: salmon-rnaseq/steps/salmon-quantification.cwl

Branch/Commit ID: c338cd3
workflow graph methylCtools_singlelib.cwl

https://github.com/ifishlin/Benchmarking_CWL.git

Path: workflows/methylCtools/methylCtools_singlelib.cwl

Branch/Commit ID: main
workflow graph SSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 71d9c83
workflow graph wf_fastqc.cwl

This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol)

https://github.com/YeoLab/eclip.git

Path: cwl/wf_fastqc.cwl

Branch/Commit ID: master